Debian apt 使用 proxy 更新

編輯 /etc/apt/apt.conf
Acquire::http::Proxy "http://proxy.tw:8080";

Debian 10 設定 /etc/rc.local

1.編輯 /etc/systemd/system/rc-local.service
[Unit]
Description=/etc/rc.local
ConditionPathExists=/etc/rc.local

[Service]
Type=forking
ExecStart=/etc/rc.local start
TimeoutSec=0
StandardOutput=tty
RemainAfterExit=yes
SysVStartPriority=99

[Install]
WantedBy=multi-user.target

2.編輯 /etc/rc.local
#!/bin/bash

exit 0;

3.chmod a+x /etc/rc.local

4.systemctl enable rc-local
 
5.systemctl start rc-local

Debian 10.4 安裝 R Studio server 摘要

sudo apt-get install gdebi-core
wget https://download2.rstudio.org/server/bionic/amd64/rstudio-server-1.3.1093-amd64.deb
sudo gdebi rstudio-server-1.3.1093-amd64.deb

Debian 10.4 安裝 R 摘要

apt install dirmngr --install-recommends
apt install software-properties-common
apt install apt-transport-https
apt update
apt upgrade -y
apt install r-base

親屬關係分析工具-KING 安裝摘要

KING

# install KING version 2.2.5 (released on June 5, 2020).
# http://people.virginia.edu/~wc9c/KING/Download.htm

src=http://people.virginia.edu/~wc9c/KING/Linux-king.tar.gz
target=/opt/KING2.2.5

[ $(which busybox) ]&& { for i in wget;do [ -f "/usr/local/bin/${i}" ] || ln -s $(which busybox) /usr/local/bin/${i}; done; };
for i in wget;do [ $(which ${i}) ]&& : || { echo check ${i}: not found ${i}! &&exit 1; } ;done;
[ -d "$target" ]&&mv ${target} ${target}.$(date +%Y-%m-%d-%H-%M);
mkdir -p $target;cd $target;
echo $target >readme.txt;echo $src >>readme.txt
wget -q -O- http://people.virginia.edu/~wc9c/KING/Linux-king.tar.gz|tar zxf -;
chmod a+x king;cd -;
for i in king;do [ -f "/usr/local/bin/${i}" ]&&mv /usr/local/bin/${i} /usr/local/bin/${i}.$(date +%Y-%m-%d-%H-%M); ln -s ${target}/${i} /usr/local/bin/${i};done;

GWAS工具-Haploview安裝摘要

Haploview

https://www.broadinstitute.org/haploview/downloads

apt install -y openjdk-11-jre*
wget -q -O /opt/Haploview.jar https://www.broadinstitute.org/ftp/pub/mpg/haploview/Haploview.jar

echo "java -jar /opt/Haploview.jar &" >/usr/local/bin/haploview
chmod a+x /usr/local/bin/haploview

GWAS 分析工具-plink 安裝摘要

# install PLINK 1.07
# http://zzz.bwh.harvard.edu//plink/download.shtml#download

src=http://zzz.bwh.harvard.edu//plink/dist/plink-1.07-x86_64.zip
target=/opt/PLINK1.07

[ $(which busybox) ]&& { for i in wget unzip;do [ -f "/usr/local/bin/${i}" ] || ln -s $(which busybox) /usr/local/bin/${i}; done; };
for i in unzip wget;do [ $(which ${i}) ]&& : || { echo check ${i}: not found ${i}! &&exit 1; } ;done;
[ -d "$target" ]&&mv ${target} ${target}.$(date +%Y-%m-%d-%H-%M);
mkdir -p $target;cd $target;
echo $target >readme.txt;echo $src >>readme.txt
wget -q -O- $src | unzip -;
mv ${target}/plink-1.07-x86_64/* ${target}/
chmod a+x ${target}/plink;

rmdir ${target}/plink-1.07-x86_64;

# install PLINK 1.90beta
# https://www.cog-genomics.org/plink/1.9/

src=http://s3.amazonaws.com/plink1-assets/dev/plink_linux_x86_64.zip
target=/opt/PLINK1.90beta

[ $(which busybox) ]&& { for i in wget unzip;do [ -f "/usr/local/bin/${i}" ] || ln -s $(which busybox) /usr/local/bin/${i}; done; };
for i in unzip wget;do [ $(which ${i}) ]&& : || { echo check ${i}: not found ${i}! &&exit 1; } ;done;
[ -d "$target" ]&&mv ${target} ${target}.$(date +%Y-%m-%d-%H-%M);
mkdir -p $target;cd $target;
echo $target >readme.txt;echo $src >>readme.txt
wget -q -O- $src | unzip -;
chmod a+x plink prettify;cd -;
for i in plink prettify;do [ -f "/usr/local/bin/${i}" ]&&mv /usr/local/bin/${i} /usr/local/bin/${i}.$(date +%Y-%m-%d-%H-%M);   ln -s ${target}/${i} /usr/local/bin/${i};done;